Allen Institute launches CellScapes initiative to transform our understanding of how human cells build tissues and organs
CellScapes marks a new era of cellular biology promising to drive advancements in cancer therapies and regenerative medicine
Seattle, WASH.—May 15, 2025—The Allen Institute today announced the launch of CellScapes, a bold new research initiative aimed at revolutionizing how scientists understand and predict the behavior of human cells as they work together to build tissues and organs. The goal: to uncover the rules and principles of how cells cooperate to make decisions in the body and provide scientists with the tools to predict—and even design—how cells behave together in health and disease.
CellScapes introduces a groundbreaking approach that will combine cutting-edge imaging and powerful computer models to track how cells change, communicate, and organize.
“Cells don’t act alone. They constantly shift and collaborate in ways we’re just beginning to deeply understand,” said Ru Gunawardane, Ph.D., Executive Director and Vice President of the Allen Institute for Cell Science. “With CellScapes, we’re moving beyond the static snapshots of biology and toward a living, dynamic picture of how cells create life.”
CellScapes will describe these changes in mathematical terms to empower researchers to test, model, and predict cell behavior with unprecedented clarity. This critical insight will offer new ways to measure and represent cells that will redefine how we study them.
“It’s a lot like astronomy and going from ‘which planet is that dot in the sky’ to ‘what are the laws of motion that describe all moving objects?’” says Wallace Marshall, Ph.D., professor of biochemistry and biophysics at the University of California, San Francisco and an advisor on the new initiative. “Once we can mathematically describe the cell and it’s behavior at a higher level and add the laws of motion like the Allen Institute is attempting to do, it’s going to change the kind of question cell biologist ask.”
Unlike traditional methods that focus on the molecules that make up cells or snapshot observations in time, CellScapes will uncover how cells behave as dynamic systems changing over time, responding to their surroundings, and working together to build complex cellular communities.
By combining cell biology, technology, and synthetic design, the team aims to program what are called “synthoids”—custom-built communities of cells whose behaviors can be manipulated—to test how cells make decisions and organize into tissues.
“The pioneering research and expertise of our scientists, particularly in the area of 3D cellular organization—and our deep commitment to open science—positions the Allen Institute at the forefront of holistically understanding of cell behavior,” said Rui Costa, D.V.M., Ph.D., President and CEO of the Allen Institute. “CellScapes is a boundary-pushing moonshot with the potential to change the paradigm in cell biology.”
CellScapes will include openly available tools, data, and visualizations for researchers, educators, and students worldwide that could pave the way for breakthroughs in regenerative medicine, cancer research, and personalized therapies.
“With CellScapes, we’re going from snapshots to storylines, uncovering rules that govern how cells make decisions, transition states, and form tissues,” Gunawardane said. “This is the future of cell biology. We’re not just observing what life does—we’re starting to understand how and why it works.”
For more information about the science behind CellScapes, visit: https://www.allencell.org/our-science-cellscapes.html
About the Allen Institute
The Allen Institute is an independent, 501(c)(3) nonprofit research organization founded by philanthropist and visionary, the late Paul G. Allen. The Allen Institute is dedicated to answering some of the biggest questions in bioscience and accelerating research worldwide. The Institute is a recognized leader in large-scale research with a commitment to an open science model. Its research institutes and programs include the Allen Institute for Brain Science, launched in 2003; the Allen Institute for Cell Science, launched in 2014; the Allen Institute for Immunology, launched in 2018; and the Allen Institute for Neural Dynamics, launched in 2021. In 2016, the Allen Institute expanded its reach with the launch of The Paul G. Allen Frontiers Group, which identifies pioneers with new ideas to expand the boundaries of knowledge and make the world better. For more information, visit alleninstitute.org.
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Media Contact
Liz Dueweke, Media Relations
206-225-0596, liz.dueweke@alleninstitute.org
END
CellScapes introduces a groundbreaking approach that will combine cutting-edge imaging and powerful computer models to track how cells change, communicate, and organize.
“Cells don’t act alone. They constantly shift and collaborate in ways we’re just beginning to deeply understand,” said Ru Gunawardane, Ph.D., Executive Director and Vice President of the Allen Institute for Cell Science. “With CellScapes, we’re moving beyond the static snapshots of biology and toward a living, dynamic picture of how cells create life.”
CellScapes will describe these changes in mathematical terms to empower researchers to test, model, and predict cell behavior with unprecedented clarity. This critical insight will offer new ways to measure and represent cells that will redefine how we study them.
“It’s a lot like astronomy and going from ‘which planet is that dot in the sky’ to ‘what are the laws of motion that describe all moving objects?’” says Wallace Marshall, Ph.D., professor of biochemistry and biophysics at the University of California, San Francisco and an advisor on the new initiative. “Once we can mathematically describe the cell and it’s behavior at a higher level and add the laws of motion like the Allen Institute is attempting to do, it’s going to change the kind of question cell biologist ask.”
Unlike traditional methods that focus on the molecules that make up cells or snapshot observations in time, CellScapes will uncover how cells behave as dynamic systems changing over time, responding to their surroundings, and working together to build complex cellular communities.
By combining cell biology, technology, and synthetic design, the team aims to program what are called “synthoids”—custom-built communities of cells whose behaviors can be manipulated—to test how cells make decisions and organize into tissues.
“The pioneering research and expertise of our scientists, particularly in the area of 3D cellular organization—and our deep commitment to open science—positions the Allen Institute at the forefront of holistically understanding of cell behavior,” said Rui Costa, D.V.M., Ph.D., President and CEO of the Allen Institute. “CellScapes is a boundary-pushing moonshot with the potential to change the paradigm in cell biology.”
CellScapes will include openly available tools, data, and visualizations for researchers, educators, and students worldwide that could pave the way for breakthroughs in regenerative medicine, cancer research, and personalized therapies.
“With CellScapes, we’re going from snapshots to storylines, uncovering rules that govern how cells make decisions, transition states, and form tissues,” Gunawardane said. “This is the future of cell biology. We’re not just observing what life does—we’re starting to understand how and why it works.”
For more information about the science behind CellScapes, visit: https://www.allencell.org/our-science-cellscapes.html
About the Allen Institute
The Allen Institute is an independent, 501(c)(3) nonprofit research organization founded by philanthropist and visionary, the late Paul G. Allen. The Allen Institute is dedicated to answering some of the biggest questions in bioscience and accelerating research worldwide. The Institute is a recognized leader in large-scale research with a commitment to an open science model. Its research institutes and programs include the Allen Institute for Brain Science, launched in 2003; the Allen Institute for Cell Science, launched in 2014; the Allen Institute for Immunology, launched in 2018; and the Allen Institute for Neural Dynamics, launched in 2021. In 2016, the Allen Institute expanded its reach with the launch of The Paul G. Allen Frontiers Group, which identifies pioneers with new ideas to expand the boundaries of knowledge and make the world better. For more information, visit alleninstitute.org.
# # #
Media Contact
Liz Dueweke, Media Relations
206-225-0596, liz.dueweke@alleninstitute.org
END