OLCF, partners release eSiMon Dashboard simulation tool
Package allows analysis and visualization on the fly via web
2011-03-02
(Press-News.org) Computational scientists have a new weapon at their disposal.
On February 1, the Electronic Simulation Monitoring (eSiMon) Dashboard version 1.0 was released to the public, allowing scientists to monitor and analyze their simulations in real-time.
Developed by the Scientific Computing and Imaging Institute at the University of Utah, North Carolina State University, and Oak Ridge National Laboratory (ORNL), this "window" into running simulations shows results almost as they occur, displaying data just a minute or two behind the simulations themselves. Ultimately, the Dashboard allows the scientists to worry about the "science" being simulated, rather than learn the intricacies of high-performance computing such as file systems and directories, an increasingly complex area as leadership systems continue to break the petaflop barrier.
"In my experience, Dashboard has been an essential tool for monitoring and controlling the large-scale simulation data from supercomputers," said Seung-Hoe Ku, an assistant research professor at New York University's Courant Institute of Mathematical Sciences who uses the Dashboard to monitor simulations of hot, ionized gas at the edge of nuclear fusion reactors, an area of great uncertainty in a device that could one day furnish the world with a nearly limitless abundance of clean energy. "The FLASH interface provides easy accessibility with web browsers, and the design provides a simple and useful user experience. I have saved a lot of time for monitoring the simulation and managing the data using the Dashboard together with the EFFIS framework."
According to team member Roselyne Tchoua of the Oak Ridge Leadership Computing Facility (OLCF), the package offers three major benefits for computational scientists: first and foremost, it allows monitoring of the simulation via the web. It is the only single tool available that provides access and insight into the status of a simulation from any computer on any browser; second, it hides the low-level technical details from the users, allowing the users to ponder variables and analysis instead of computational elements; and finally, it allows collaboration between simulation scientists from different areas and degrees of expertise. In other words, researchers separated geographically can see the same data simultaneously and collaborate on the spot.
Furthermore, via easy clicking and dragging, researchers can generate and retrieve publication-quality images and video. Hiding the complexity of the system creates a lighter and more accessible web portal and a more inclusive and diverse user base.
The interface offers some basic features such as visualizing simulation-based images, videos and textual information. By simply dragging and dropping variable names from a tree view on the monitoring page onto the main canvas, users can view graphics associated with these variables at a particular time stamp. Furthermore, they can use playback features to observe the variables changing over time.
Researchers can also take electronic notes on the simulation as well as annotate movies. Other features include vector graphics with zoom/pan capabilities, data lineage viewing, and downloading processed and raw data onto local machines. Future versions will include hooks into external software and user-customized analysis and visualization tools.
"We are currently working on integrating the eSiMon application programming interface into an ADIOS method so that ADIOS users automatically get the benefit of monitoring their running simulation," said the OLCF's Scott Klasky, a leading developer of ADIOS, an open-source I/O performance library.
The "live" version of the dashboard is physically located at Oak Ridge National Laboratory (ORNL) and can be accessed with an OLCF account at https://esimmon.ccs.ornl.gov. This version of the dashboard gives an overview of ORNL and National Energy Research Scientific Computing Center computers. Users can quickly determine which systems are up or down, which are busy and where they would like to launch a job. Users can also view the status of their running and past jobs as well as those of their collaborators.
However, a portable version of eSiMon is also available for any interested party, and the platform cuts across scientific boundaries so that the Dashboard can be used for any type of scientific simulation. For information on acquiring and/or using the eSiMon dashboard, visit http://www.olcf.ornl.gov/center-projects/esimmon/.
###
END
ELSE PRESS RELEASES FROM THIS DATE:
2011-03-02
EVANSTON, Ill. --- Fans may think of Jimmy Connors as an "old school" tennis player, but according to a new ranking system developed by a Northwestern University researcher, Connors is best player in the history of the game.
The rankings are published in PLoS ONE, a journal published by the Public Library of Science.
Male tennis players who played in at least one Association of Tennis Professionals match between 1968 and 2010 were evaluated through network analysis, said Filippo Radicchi, author of the study.
Ranking tennis players is a novel way to show how complex ...
2011-03-02
Low self-esteem is associated with a greater risk of mental health problems such as eating disorders and depression. From a public health perspective, it is important for staff in various health-related professions to know about self-esteem. However, there is a vast difference between the research-based knowledge on self-esteem and the simplified popular psychology theories that are disseminated through books and motivational talks, reveals research from the University of Gothenburg.
Current popular psychology books distinguish between self-esteem and self-confidence. ...
2011-03-02
Diatoms account for a large proportion of the phytoplankton found in the water, and live both in the open sea and in freshwater lakes. By reviving 100-year-old spores that had laid buried and inactive in bottom sediment, researchers at the University of Gothenburg, Sweden, have shown that diatoms are also genetically stable and survival artists.
Recent research has shown that diatoms exhibit great genetic differences and that they occur in discrete populations, which means that they multiply sexually to a greater extent than previously believed. What makes diatoms special ...
2011-03-02
Los Angeles, CA (February 28, 2011) Eating more tomatoes and tomato products can make people healthier and decrease the risk of conditions such as cancer, osteoporosis and cardiovascular disease, according to a review article the American Journal of Lifestyle Medicine, (published by SAGE).
Of all the non-starchy vegetables, Americans eat more tomatoes and tomato products than any others. Researchers Britt Burton-Freeman, PhD, MS, and Kristin Reimers, PhD, RD of the National Center for Food Safety & Technology, Illinois Institute of Technology and ConAgra Foods, Inc., ...
2011-03-02
Researchers at the Georgia Tech Research Institute (GTRI) are developing a solid composite material to help cool small, powerful microelectronics used in defense systems. The material, composed of silver and diamond, promises an exceptional degree of thermal conductivity compared to materials currently used for this application.
The research is focused on producing a silver-diamond thermal shim of unprecedented thinness – 250 microns or less. The ratio of silver to diamond in the material can be tailored to allow the shim to be bonded with low thermal-expansion stress ...
2011-03-02
New findings published in Cancer Epidemiology, Biomarkers & Prevention, a journal of the American Association for Cancer Research, confirm the risk of breast cancer among women who are obese and not physically active, and suggests additional mechanisms beyond estrogen.
Scientists from the Women's Health Initiative have found a relationship between obesity, physical activity and triple-negative breast cancer, a subtype of breast cancer characterized by a lack of estrogen, progesterone and HER2 expression. Triple-negative breast cancers account for about 10 to 20 percent ...
2011-03-02
SEATTLE – Millions of people worldwide may be at risk of early death from diabetes and related cardiovascular illnesses because of poor diagnosis and ineffective treatment, a new study by the Institute for Health Metrics and Evaluation (IHME) at the University of Washington shows. The study examines diabetes diagnosis, treatment, and management in Colombia, England, Iran, Mexico, Scotland, Thailand, and the United States.
In the United States alone, nearly 90% of adult diabetics – more than 16 million adults aged 35 and older – have blood sugar, blood pressure, and cholesterol ...
2011-03-02
EDITOR'S PICK - DREADD-ing your next meal
In the face of the growing obesity epidemic, much research has focused on the neuronal control of feeding behavior. Agouti-related protein (AgRP) neurons express three proteins that have been implicated in changes in energy balance, but the studies linking AgRP neurons to feeding behavior have produced mixed results.
To directly analyze the role of AgRP neurons, Bradford Lowell and colleagues, at Beth Israel Deaconess Medical Center in Boston, used DREADD technology (designer receptors exclusively activated by designer drugs) ...
2011-03-02
Writing in the journal Nature Communications, the team have created a microscope which shatters the record for the smallest object the eye can see, beating the diffraction limit of light.
Previously, the standard optical microscope can only see items around one micrometre – 0.001 millimetres – clearly.
But now, by combining an optical microscope with a transparent microsphere, dubbed the 'microsphere nanoscope', the Manchester researchers can see 20 times smaller – 50 nanometres ((5 x 10-8m) – under normal lights. This is beyond the theoretical limit of optical microscopy.
This ...
2011-03-02
Intensive adherence counseling around the time of HIV treatment initiation significantly reduces poor adherence and virologic treatment failure in sub-Saharan Africa whereas using an alarm device has no effect, according to a study in this week's PLoS Medicine by Michael Chung from the University of Washington, Seattle, USA, and colleagues.
The findings of this study define an adherence counseling protocol that is effective; these findings are relevant to other HIV clinics caring for large numbers of patients in sub-Saharan Africa.
As poor adherence to HIV treatment ...
LAST 30 PRESS RELEASES:
[Press-News.org] OLCF, partners release eSiMon Dashboard simulation tool
Package allows analysis and visualization on the fly via web