INFORMATION:
Double delight: New synthetic transmembrane ion channel can be activated in two ways
2021-02-01
(Press-News.org) A key thread that holds together the delicate balance of a complex biological system is the transmembrane ion channel. These are supramolecular, or multi-molecule, ion and molecule exchange routes embedded within cell membranes to ensure essential chemical transport to and from the cell and facilitate cell signaling.
In recent years, synthetic biomolecules that mimic the structures and functions of natural ion channels have garnered much interest among molecular biology researchers as models for studying the fundamentals of these channels and perhaps, even creating drug alternatives or developing advanced biosensors.
However, although several good synthetic ion channels have been developed, most of them are activated via only a single stimulus and none are what scientists call "anisotropic dual-stimuli-responsive", or ones that can be activated and controlled by two specific kinds of stimuli dependent on the biased orientation of the structure within the membrane. This has limited research scope in the field.
Now, finally, a group of scientists from Tokyo Tech and the University of Tokyo, Japan, have successfully synthesized a biomolecule that resembles a natural anisotropic dual-stimuli-responsive channel: transient receptor potential melastatin 8 (TRPM8), which underlies signal transmissions in neurons. Their channel is called VF and their breakthrough is published in Journal of the American Chemical Society.
VF is a multiblock amphiphilic (it has both water loving (hydrophilic) and fat loving (lipophilic) properties) molecule that can assemble to form supramolecular channels. Each unit in a block comprises an organic lipophilic/hydrophobic moiety with six fluoride atoms that position it within the lipid bilayer of the cell membrane and lend it an electrical polarity; a phosphate ester group which ensures that the structure is biased in its orientation (with the phosphate side towards the extracellular space); and flexible ethylene glycol hydrophilic chains between hydrophobic units and on the ends that contribute to the stimuli-responsiveness.
The scientists' studies of this structure showed that by manipulating the polarities and amplitudes of applied voltages, the channel could be activated. Prof. Kazushi Kinbara, lead scientist in the team, explains: "Without the application of a voltage, the hydrophobic units of VF repel each other so that they would be spatially separated from each other and would not form clear and functional transmembrane ion channels. When a voltage with the electric field vector antiparallel to the electrical polarity of the VF is applied, a displacement of electron distribution within VF occurs, weakening the repulsion between hydrophobic units and enhancing their face-to-face stacking. This causes conformational changes throughout the molecule which leads to the formation of supramolecular channels that can efficiently transport ions across the membrane."
The scientists found that the second stimulus had to do with the binding of ligand (R)-propranolol at the connection between the phosphate esters and the hydrophobic units. As Prof. Kinbara explains, "(R)-propranolol is an antiarrhythmic agent known to block voltage-gated sodium channels. Moreover, our previous studies indicated that it interacts with phosphate ester groups and aromatic units to localize inside the channel pore and block ion transport. That is why we chose it for our study." Their nuclear magnetic resonance spectroscopy revealed its binding at the phosphate sites, and that it completely inhibits the current flow and thus the ion channel activity of VF. Its removal via the addition of β-cyclodextrin reactivates the channel. "Reversible ligand binding such as this is key to maintaining homeostasis within the body via the regulation of transmembrane ion channels. The highly regulated orientation of VF allowed for this anisotropic response to this ligand molecule," Prof. Kinbara says. "With our success in this study, there is now great potential for sensing and manipulating various biologically important events."
Indeed, with the synthesis of VF, suited to the variable cellular environments ubiquitous in biological systems, perhaps, new possibilities for research emerge in the field of molecular biology.
ELSE PRESS RELEASES FROM THIS DATE:
Scientists develop method to detect fake news
2021-02-01
Social media is increasingly used to spread fake news. The same problem can be found on the capital market - criminals spread fake news about companies in order to manipulate share prices. Researchers at the Universities of Göttingen and Frankfurt and the Jožef Stefan Institute in Ljubljana have developed an approach that can recognise such fake news, even when the news contents are repeatedly adapted. The results of the study were published in the Journal of the Association for Information Systems.
In order to detect false information - often fictitious data that presents a company in a positive light - the scientists used machine learning methods and ...
Study finds revised concussion guidelines shorten duration of symptoms
2021-02-01
The adoption of recommended changes in concussion management led to a reduction in the length of symptoms among 11- to 18-year-old athletes with first-time, sports-related concussions, according to new research in the Journal of Osteopathic Medicine. These outcomes support the widespread adoption of the updated concussion guidelines.
Researchers conducted a retrospective review of the medical records of athletes who sustained a concussion between 2016 and 2018 and were treated by a physician who used the revised approach to concussion management. They then compared the data with a previously published data set from athletes who sustained a concussion between 2011 and 2013 and whose physicians followed older guidelines for concussion ...
When rhinos fly: Upside down the right way for transport
2021-02-01
ITHACA, NY - When it comes to saving endangered species of a certain size, conservationists often have to think outside the box.
This was reinforced by a recent study published in the Journal of Wildlife Diseases, led by faculty in the College of Veterinary Medicine, which analyzed the effects of hanging tranquilized black rhinoceroses upside down by their feet.
"We found that suspending rhinos by their feet is safer than we thought," said Dr. Robin Radcliffe, senior lecturer in wildlife and conservation medicine and first author of the study.
While ...
Virtual conference CO2 emissions quantified in new study
2021-02-01
The virtual conferencing that has replaced large, in-person gatherings in the age of COVID-19 represents a drastic reduction in carbon emissions, but those online meetings still come with their own environmental costs, new research from the University of Michigan shows.
The research offers a framework for analyzing and tallying the carbon emissions of an online conference based on factors that include everything from energy used by servers and monitors to the resources used to manufacture and distribute the computers involved.
It also includes a case study showing that a May 2020 virtual conference held by the AirMiners carbon removal networking community produced 66 times less greenhouse gas emissions that an in-person gathering in San Francisco would have.
And it highlights ...
Experts put new method of analysing children's play to the test
2021-02-01
How to study the stages children go through as they play together has been highlighted in new research by a Swansea University academic.
Play is a crucial part of a child's development. It is how children develop cognitive skills and learn new information as well as social skills and it is an important topic of research by social scientists.
Dr Pete King, who specialises in play and childhood studies, devised a method of studying the process of children's play - the Play Cycle Observation Method (PCOM) - and has now published research which demonstrates how effective it is as an observational tool.
Working with collaborators Professor LaDonna Atkins and Dr Brandon Burr, his latest ...
Oncotarget: Neuroendocrine carcinoma of uterine cervix findings shown by MRI
2021-02-01
Oncotarget recently published "Neuroendocrine carcinoma of uterine cervix findings shown by MRI for staging and survival analysis – Japan multicenter study" which reported that to investigate neuroendocrine carcinoma of the uterine cervix cases for MRI features and staging, as well as pathological correlations and survival.
In 50 patients who underwent a radical hysterectomy and lymphadenectomy without neoadjuvant chemotherapy, intrapelvic T staging by MRI overall accuracy was 88.0% with reference to pathology staging, while patient-based sensitivity, specificity, and accuracy for metastatic ...
Oncotarget: Simvastatin is a potential candidate drug in ovarian clear cell carcinomas
2021-02-01
Oncotarget recently published "Simvastatin is a potential candidate drug in ovarian clear cell carcinomas" which reported that based on previous studies, the authors assessed the anti-proliferative effect of simvastatin, a Rho GTPase interfering drug, in three OCCC cell lines: JHOC-5, OVMANA and TOV-21G, and one high-grade serous ovarian cancer cell line, Caov3. The authors used the Rho GTPase interfering drug CID-1067700 as a control.
All OCCC cell lines were more sensitive to single-agent simvastatin than the HGSOC cells, while all cell lines were less sensitive to CID-1067700 than to simvastatin.
Most treatments inhibited migration, ...
Computer model makes strides in search for COVID-19 treatments
2021-02-01
COLUMBUS, Ohio - A new deep-learning model that can predict how human genes and medicines will interact has identified at least 10 compounds that may hold promise as treatments for COVID-19.
All but two of the drugs are still considered investigational and are being tested for effectiveness against hepatitis C, fungal disease, cancer and heart disease. The list also includes the approved drugs cyclosporine, an immunosuppressant that prevents transplant organ rejection, and anidulafungin, an antifungal agent.
The discovery was made by computer scientists, meaning much more work needs to be done before any of these medications would be confirmed as safe and effective treatments ...
Wonder fungi
2021-02-01
Michelle O'Malley(link is external) has long been inspired by gut microbes. Since she began studying the herbivore digestive tract, the UC Santa Barbara chemical engineering professor has guided several students to their doctoral degrees, won early and mid-career awards (including a recognition from President Obama), attained tenure and advanced to the position of full professor. She even had three children along the way. A constant through it all: goat poop.
"This has been the longest single effort in my lab," said O'Malley, who with her research team way back in 2015 first embarked on an ambitious project to characterize gut microbes in large herbivores. The purpose? To understand how these animals manage, via their microbiomes, ...
Paving the way for effective field theories
2021-02-01
Over the past century, a wide variety of models have emerged to explain the complex behaviours which unfold within atomic nuclei at low energies. However, these theories bring up deep philosophical questions regarding their scientific value. Indeed, traditional epistemological tools have been rather elaborated to account for a unified and stabilised theory rather than to apprehend a plurality of models. Ideally, a theory is meant to be reductionist, unifying and fundamentalist. In view of the intrinsic limited precision of their prediction and of the difficulty in assessing a priori their range of applicability, as well as of their specific and disconnected character, traditional ...