Understanding how fat molecules are distributed and function in living organisms is key to uncovering mechanisms of aging, disease, and metabolism. Caenorhabditis elegans, a transparent roundworm, is a widely used model for studying fat storage due to its genetic similarity to humans and well-defined anatomy. However, visualizing lipids at high resolution in such a small organism has posed a major technical challenge.
A research team at Okayama University, Japan, led by Professor Masazumi Fujiwara and his PhD student Ms. Sara Mandic, in collaboration with Professor Ron M. A. Heeren of Maastricht University, Netherlands, has developed a new microfluidics-based workflow that enables high-resolution, 3D lipid imaging in C. elegans. Their findings were published in Volume 15 of the journal Scientific Reports on July 8, 2025.
The team combined matrix-assisted laser desorption/ionization mass-spectrometry imaging (MALDI-MSI) with conventional lipid staining techniques to map both the identity and location of lipid molecules inside the worm. To preserve internal structures, young adult nematodes were aligned and immobilized on a custom-designed microfluidic chip, embedded in a gelatin–carboxymethyl cellulose mixture, sectioned using a cryotome and analyzed through MALDI-MSI. Each section was also subjected to Oil Red O staining, which highlights neutral fats, to confirm and complement the imaging results. “This is the first time we’ve been able to map lipid distributions in C. elegans with such spatial resolution while preserving internal structures,” explains Ms. Mandic.
Conventional lipid analysis techniques often involve trade-offs—either staining lipids without identifying them or measuring them without preserving spatial information. This new method does both: it detects specific lipid molecules and shows where they are located inside the body. The ability to retain the internal anatomy of the worm during sample preparation is key to understanding how lipids behave in different tissues. “Our technique gives researchers a reliable way to study fat dynamics in specific tissues of a single nematode,” explains Ms. Mandic.
Using their method, the team identified several lipids that clustered in distinct anatomical regions, including the pharynx, intestine, and reproductive system. For instance, one lipid linked to cholesterol metabolism was found primarily in the pharynx and anterior intestine, suggesting a potential role in nutrient absorption. These findings, made possible by the method’s structural preservation, provide valuable insight into how fat molecules are organized and function across different parts of the worm.
The researchers also extended their analysis beyond two-dimensional imaging. By aligning and stacking consecutive tissue slices, they created three-dimensional reconstructions of individual nematodes, offering a full-body view of lipid distribution with remarkable anatomical detail. This approach allowed them to visualize how lipids are arranged throughout the entire ~1 mm-long organism—something that had not been achieved at this level of precision before. Importantly, the method was shown to be highly reproducible. Variations between individual nematodes were greater than any technical inconsistencies, demonstrating the accuracy and robustness of the workflow. “This method allows us to see not just what lipids are present, but exactly where they are inside the body—whether in the intestine, pharynx, or embryos,” adds Ms. Mandic.
Because C. elegans shares many fundamental biological pathways with humans, this technique has wide-reaching implications for biomedical research. It enables the study of lipid behavior in response to genetic mutations, environmental stress, drug treatments, and aging—all key factors in human health and disease. The team now plans to apply this workflow to various C. elegans strains, including those carrying disease-related mutations, and to integrate the technique with lipid quantification tools.
“Our work opens the door to visualizing lipid biology in an entirely new way—one that’s precise, reproducible, and rich in detail,” concludes Ms. Mandic. Altogether, this study equips researchers with a powerful tool for examining fat metabolism at the organ-specific level in C. elegans, paving the way for deeper insights into aging, metabolic disorders, and disease mechanisms.
About Okayama University, Japan
As one of the leading universities in Japan, Okayama University aims to create and establish a new paradigm for the sustainable development of the world. Okayama University offers a wide range of academic fields, which become the basis of the integrated graduate schools. This not only allows us to conduct the most advanced and up-to-date research, but also provides an enriching educational experience.
Website: https://www.okayama-u.ac.jp/index_e.html
About Professor Masazumi Fujiwara and PhD Student Ms. Sara Mandic (Okayama University, Japan)
Dr. Masazumi Fujiwara is a Professor in Chemistry at Okayama University, where he leads the Nanochemistry Laboratory. His work focuses on nanomaterials for biological applications and quantum nanophotonics. He has received awards including the Masao-Horiba Award and the Nambu Yoichiro Award.
Website: nanochem-okayama-u.net
LinkedIn: Masazumi Fujiwara
Ms. Sara Mandic is a PhD student in Prof. Fujiwara’s lab and an OU Fellowship recipient. Her research combines quantum thermometry and advanced imaging to study thermotaxis and molecular mechanisms in C. elegans. Originally from Croatia, she holds a Master’s in Biomedical Sciences (specializing in Medical Imaging) from Maastricht University in the Netherlands.
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