New, rare type of small cell lung cancer identified by MSK research team

(Press-News.org) A team of doctors and researchers at Memorial Sloan Kettering Cancer Center (MSK) have identified a new, rare type of small cell lung cancer that primarily affects younger people who have never smoked.

Their findings, which include a detailed analysis of the clinical and genetic features of the disease, also highlight vulnerabilities that could help doctors make better treatment decisions for people diagnosed with it.

“It’s not every day you identify a new subtype of cancer,” says Natasha Rekhtman, MD, PhD, an MSK pathologist specializing in lung cancer and the first author of a paper published August 26 in Cancer Discovery presenting the team’s analysis. “This new disease type has distinct clinical and pathological features, and a distinct molecular mechanism.”

The study brought together the expertise of 42 physicians and researchers across MSK — from the doctors who treat lung cancer and the pathologists who evaluate cells and tissues to make a diagnosis, to specialists in tumor genetics and computational analysis.

“Understanding this new type of lung cancer required a broad spectrum of expertise from the laboratory to the clinic,” says Charles Rudin, MD, PhD, a lung cancer specialist and the study’s senior author.

Defining a New Lung Cancer Subtype: Atypical Small Cell Carcinoma Small cell lung cancer (SCLC) is relatively rare to begin with, accounting for 10% to 15% of all lung cancers, according to the American Cancer Society. And the newly discovered subtype accounts for just a fraction of those. Out of 600 patients with SCLC whose cancers were analyzed for the study, only 20 people (or 3%) were found to have the rare subtype.

SCLC is normally characterized by the deactivation of two genes that protect against the development of cancer — RB1 and TP53 — but patients with the new subtype have intact copies of those genes. Instead, most carried a signature “shattering” of one or more of the chromosomes in their cancer cells, an event known as chromothripsis.

The new subtype appears to arise through a transformation of lower-grade neuroendocrine tumors (pulmonary carcinoids) into more aggressive carcinomas. The research team has dubbed the new type “atypical small cell lung carcinoma.”

“Patients who develop small cell lung cancer tend to be older and have a significant history of smoking,” says Dr. Rudin, the Deputy Director of MSK’s Cancer Center. “The first patient we identified with atypical SCLC, and whose case led us to look for more, was just 19 years old and not a smoker.”

This held true for the others with the subtype as well. The mean age at diagnosis was 53 — which is considered young; the average age for a lung cancer diagnosis is 70. Sixty-five percent of these patients were never smokers, while 35% reported a history of light smoking (less than 10 pack-years).

Treating Atypical Small Cell Lung Carcinoma The analysis also found that the unique genomic changes that give rise to atypical SCLC mean that standard, first-line, platinum-based chemotherapies don’t work as well. And their findings point toward some treatment strategies that may work better.

“We often talk about cancer as an ongoing buildup of mutations,” Dr. Rekhtman says. “But this cancer has a very different origin story. With chromothripsis, there’s one major catastrophic event that creates a Frankenstein out of the chromosome, rearranging things in a way that creates multiple gene aberrations, including amplification of certain cancer genes.”

That’s why patients with atypical SCLC may benefit, for example, from investigational drugs that target the unusual DNA structures that result from chromothripsis, known as extrachromosomal circular DNA, the researchers note.

One Patient Spurs a Detective Story Khaliq Sanda was 19 and a college sophomore at Duke University when he was diagnosed with small cell lung cancer. By the time it was discovered, the cancer had already spread to other parts of his body.

“That is very unusual,” says Dr. Rudin, who was one of Khaliq’s doctors along with Lisa DeAngelis, MD, and others. “This is a type of cancer that’s almost always associated with heavy smoking. So that prompted us to begin looking for other similar examples of never-smokers with small cell lung cancer. And between the medical oncologists in the clinic and the pathologists examining these specimens, we identified a group of patients who fit this pattern.”

“And then we started to dig in to understand what’s really happening with these unusual cancers,” Dr. Rekhtman adds.

Family and Friends Show Their Love Khaliq’s family lived in Georgia, but his academic excellence led to his acceptance into a program in Connecticut called A Better Chance of Westport, which provides young scholars of color an opportunity to attend one of the nation’s top-performing high schools. In Westport, he lived with Lori and Dave Sochol, who became a second family to him. When things got tough, the Sochols were right there with him.

“I never missed an appointment with him,” Lori Sochol says. “I loved him like a son.”

This photo of Khaliq Sanda with his mom Angela (right) and “second mom” Lori Sochol (center) graces the MSK Giving page set up in his memory. His friends and family raised more than $150,000 to help other young adults with cancer..

After his diagnosis, Khaliq’s mother, Angela Sanda, also relocated to Connecticut to help care for Khaliq until the doctors gave him the OK to return to college.

Despite interruptions for his treatments, Khaliq was determined to continue his college coursework. He graduated from Duke in 2018 with a bachelor’s degree in global health and biology. He hoped to one day go to medical school and become a psychiatrist. After graduation, Khaliq worked as a community outreach coordinator at MSK, where he helped to enroll taxi drivers in a program focused on reducing hypertension.

“People fell in love with him the first time they met him,” his mother says. That’s why he was affectionately known as the “Mayor of Westport” and the “King of Duke,” she added.

As Khaliq’s disease progressed, his family and friends never left his side. His parents, Angela and Oumarou Sanda, and his brother, Kimbo Sanda, temporarily relocated to spend Khaliq’s final months with him.

As Khaliq moved from crutches to a walker to a wheelchair, his mind remained sharp and his spirits high, Kimbo says.

“A point came where I had to physically pick him up and carry him,” says Kimbo, a physician who lives in Oklahoma. “But he never lost his spirit and his positivity. I can’t explain how much admiration and pride I have for the way he held himself through it all. It helped all of us — his family, his friends.”

When he could no longer negotiate stairs, his college friends and their families rented him an apartment with an elevator. Lori brought her Goldendoodle, Stella, by for visits.

Then, as the end came, dozens of his friends filled the waiting room at the hospital — some canceling vacations to come pay their respects.

“I’ve never seen anything like it,” Lori says. “And they all got to say goodbye.”

‘An Amazing Gift to Society and Science’ Khaliq lived for five years after his diagnosis, which is itself unusual — the five-year survival rate for patients with advanced SCLC is miniscule. The atypical form of the disease, however, tends to be somewhat less aggressive, the researchers say, noting that these patients also tend to be considerably younger and healthier than most people diagnosed with SCLC.

After Khaliq died in March 2021, local officials named a bridge in Westport in his memory. Loved ones raised more than $150,000 for MSK to help other young adults with cancer.

“The way you lived after your diagnosis inspired me,” one Sigma Nu fraternity brother wrote in one of the many online tributes to Khaliq. “I had no idea what to say to you, other than to say that I loved you, but you seemed fearless in the face of this new challenge.” 

“The infectious laugh, the warmth, the intellect, the desire to be a part of a conversation. Khaliq was mine and everyone’s friend,” another tribute reads.

Dr. Rekhtman and Dr. Rudin praised Khaliq’s decision to donate tissue after he died so that his cancer could be further analyzed to help future patients.

“It was an amazing gift to society and science,” Dr. Rekhtman says.

Angela Sanda agrees, saying, “The doctors did everything they could for him. He received the best care. And I’m glad that they are learning things from his cancer that could help others.”

Research That Can Only Be Done in a Place Like MSK The fact that Khaliq and his family turned to MSK for his care paved the way for the discovery of the new subtype, the doctors note.

That’s because MSK patients routinely have the DNA in their tumors sequenced with a test called MSK-IMPACT®. It analyzes changes to more than 500 key genes known to drive cancer and helps doctors identify drugs that will work best against the specific mutations that a patient’s cancer harbors.

“So not only were we looking at patients with specific demographic characteristics — young never-smokers — we were able to take advantage of this unique MSK resource to look for patients whose tumors shared the same genomic features as Khaliq’s,” Dr. Rekhtman says.

Moreover, the wealth of sequencing and treatment data available at MSK allowed researchers to compare treatment programs and outcomes from the patients they identified with the new subtype, which helped them zero in on strategies that may help other patients diagnosed with atypical SCLC.

“There were some major lessons we learned from these patients,” Dr. Rudin says. “In general, they don’t respond as well to standard treatments as typical SCLC patients, but our study suggests several potential emerging or established therapeutic opportunities.”

“This effort exemplifies the deep interconnection one finds between patient care and research at MSK,” Dr. Rudin says.

Additional Authors, Funding, and Disclosures For a full list of authors, please refer to the journal article.

This work was supported by grants from the National Cancer Institute (R35 CA263816, U24 CA213274, P30 CA0087448), the Druckenmiller Center for Lung Cancer Research, and the Sharon and Jon Corzine Foundation.

Dr. Rekhtman reports serving on the scientific advisory board of Merck. Dr. Rudin reports serving as consultant for Amgen, Astra Zeneca, Chugai, D2G, Daiichi Sankyo, Hoffman-La Roche, Jazz, and Legend; and he serves on the scientific advisory boards of Auron, Bridge Medicines, DISCO, Earli, and Harpoon Therapeutics. For a full list of disclosures, please refer to the journal article.

Read the article: “Chromothripsis-mediated small cell lung carcinoma,” Cancer Discovery. DOI: 10.1158/2159-8290.CD-24-0286

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