"Molecular Tomographer" algorithm maps gene expression in space
As we accumulate more and more gene-sequencing information, cell-type databases are growing in both size and complexity. There is a need to understand where different types of cells are located in the body, and to map their gene expression patterns into specific locations in tissues and organs. For example, a gene can be actively expressed in one cell while suppressed in another.
One way of mapping genes into tissues is a technique called in situ hybridization. Simply put, a target gene is tagged ("hybridized") with a fluorescent marker within the sections of the tissue it is located in (the "in situ" part). The sections are then visualized under a specialized microscope to see where the gene "lights up". Consecutive photographs of each section are then put together to generate a ...















