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Machine learning models for diagnosing COVID-19 are not yet suitable for clinical use

2021-03-15
Researchers have found that out of the more than 300 COVID-19 machine learning models described in scientific papers in 2020, none of them is suitable for detecting or diagnosing COVID-19 from standard medical imaging, due to biases, methodological flaws, lack of reproducibility, and 'Frankenstein datasets.' The team of researchers, led by the University of Cambridge, carried out a systematic review of scientific manuscripts - published between 1 January and 3 October 2020 - describing machine learning models that claimed to be able to diagnose or prognosticate ...

Could we recycle plastic bags into fabrics of the future?

Could we recycle plastic bags into fabrics of the future?
2021-03-15
In considering materials that could become the fabrics of the future, scientists have largely dismissed one widely available option: polyethylene. The stuff of plastic wrap and grocery bags, polyethylene is thin and lightweight, and could keep you cooler than most textiles because it lets heat through rather than trapping it in. But polyethylene would also lock in water and sweat, as it's unable to draw away and evaporate moisture. This antiwicking property has been a major deterrent to polyethylene's adoption as a wearable textile. Now, MIT engineers have spun polyethylene into fibers ...

Melting glaciers could speed up carbon emissions into the atmosphere

Melting glaciers could speed up carbon emissions into the atmosphere
2021-03-15
The loss of glaciers worldwide enhances the breakdown of complex carbon molecules in rivers, potentially contributing further to climate change. An international research team led by the University of Leeds has for the first time linked glacier-fed mountain rivers with higher rates of plant material decomposition, a major process in the global carbon cycle. As mountain glaciers melt, water is channelled into rivers downstream. But with global warming accelerating the loss of glaciers, rivers have warmer water temperatures and are less prone to variable water flow and sediment movement. These conditions are then much more favourable for fungi to establish and ...

Open door to treatment of renal fibrosis by showing that it is caused by telomere shortening

Open door to treatment of renal fibrosis by showing that it is caused by telomere shortening
2021-03-15
Ageing is a common factor in many diseases. So, what if it were possible to treat them by acting on the causes of ageing or, more specifically, by acting on the shortening of telomeres, the structures that protect chromosomes? This strategy is being pursued by the Telomeres and Telomerase Group of the Spanish National Cancer Research Centre (CNIO), which has already succeeded to cure pulmonary fibrosis and infarctions in mice by lengthening telomeres. Now they take a first step towards doing the same with renal fibrosis by demonstrating that short telomeres are at the origin of this disease, ...

Oncotarget: Folinic acid in colorectal cancer: Esquire or fellow knight?

Oncotarget: Folinic acid in colorectal cancer: Esquire or fellow knight?
2021-03-15
Oncotarget published "Folinic acid in colorectal cancer: esquire or fellow knight? Real-world results from a mono institutional, retrospective study" which reported that the stock of therapeutic weapons available in metastatic colorectal cancer has been progressively grown over the years, with improving both survival and patients' clinical outcome: notwithstanding advances in the knowledge of mCRC biology, as well as advances in treatment, fluoropyrimidine antimetabolite drugs have been for 30 years the mainstay of chemotherapy protocols for this malignancy. 5-Fluorouracil seems to act differently depending on administration method: elastomer-mediated continuous infusion better inhibits Thymidylate ...

Oncotarget: A novel isoform of Homeodomain-interacting protein kinase-2

Oncotarget: A novel isoform of Homeodomain-interacting protein kinase-2
2021-03-15
Oncotarget published "A novel isoform of Homeodomain-interacting protein kinase-2 promotes YAP/TEAD transcriptional activity in NSCLC cells" which reported that In this study, the authors show that a new HIPK2 isoform increases TEAD reporter activity in NSCLC cells. They detected and cloned a novel HIPK2 isoform 3 and found that its forced overexpression promotes TEAD reporter activity in NSCLC cells. Expressing HIPK2 isoform 3_K228A kinase-dead plasmid failed to increase TEAD reporter activity in NSCLC cells. Next, they showed that two siRNAs targeting HIPK2 decreased HIPK2 isoform 3 and YAP protein levels in NSCLC cells. In summary, this Oncotarget study indicates that HIPK2 isoform 3, the main HIPK2 isoform ...

Oncotarget: MicroRNA-4287 is controlling epithelial-to mesenchymal transition in prostate cancer

Oncotarget: MicroRNA-4287 is controlling epithelial-to mesenchymal transition in prostate cancer
2021-03-15
The cover for issue 51 of Oncotarget features Figure 5, "miR-4287 overexpression regulates EMT in prostate cancer cell lines," published in "MicroRNA-4287 is a novel tumor suppressor microRNA controlling epithelial-to mesenchymal transition in prostate cancer" by Bhagirath, et al. which reported that the authors analyzed the role of miR-4287 in PCa using clinical tissues and cell lines. Receiver operating curve analysis showed that miR-4287 distinguishes prostate cancer from normal with a specificity of 88.24% and with an Area under the curve of 0.66. Further, these authors found that miR-4287 ...

In severe COVID, cytokine "hurricane" in lung attracts damaging inflammatory cells

2021-03-15
NEW YORK, NY (March 15, 2021)--A cytokine "hurricane" centered in the lungs drives respiratory symptoms in patients with severe COVID-19, a new study by immunologists at Columbia University Vagelos College of Physicians and Surgeons suggests. Two cytokines, CCL2 and CCL3, appear critical in luring immune cells, called monocytes, from the bloodstream into the lungs, where the cells launch an overaggressive attempt to clear the virus.  Targeting these specific cytokines with inhibitors may calm the immune reaction and prevent lung tissue damage. Currently, one drug that blocks immune responses to CCL2 is being studied in clinical trials of patients with severe COVID-19. Survivors of severe COVID-19, the study also found, had a greater abundance of antiviral T cells in their lungs ...

Significant variation found in timing andselection of genetic tests for non--small-cell lung cancer

Significant variation found in timing andselection of genetic tests for non--small-cell lung cancer
2021-03-15
Philadelphia, March 15, 2021 - Biomarker testing surveys specific disease-associated molecules to predict treatment response and disease progression; however its use has complicated the diagnosis of non-small-cell lung cancer (NSCLC). In a new study in The Journal of Molecular Diagnosis, published by Elsevier, investigators provide for the first time a complete overview of biomarker testing, spanning multiple treatment lines, in a single cohort of patients. Using exploratory data analysis and process-mining techniques in a real-world setting, investigators identified significant variation in test utilization and treatment. They also found that while ...

Study reveals new clues about the architecture of X chromosomes

2021-03-15
BOSTON - Researchers at Massachusetts General Hospital (MGH) have uncovered new clues that add to the growing understanding of how female mammals, including humans, "silence" one X chromosome. Their new study, published in Molecular Cell, demonstrates how certain proteins alter the "architecture" of the X chromosome, which contributes to its inactivation. Better understanding of X chromosome inactivation could help scientists figure out how to reverse the process, potentially leading to cures for devastating genetic disorders. Female mammals have two copies of the X chromosome in all of their cells. Each X chromosome contains many genes, but only one of the pair ...

Voltage from the parquet

Voltage from the parquet
2021-03-15
Ingo Burgert and his team at Empa and ETH Zurich has proven it time and again: Wood is so much more than "just" a building material. Their research aims at extending the existing characteristics of wood in such a way that it is suitable for completely new ranges of application. For instance, they have already developed high-strength, water-repellent and magnetizable wood. Now, together with the Empa research group of Francis Schwarze and Javier Ribera, the team has developed a simple, environmentally friendly process for generating electricity from a type of wood sponge, as they reported last week in the journal Science Advances. Voltage through deformation If you want to generate electricity ...

NASA images reveal important forests and wetlands are disappearing in Belize

NASA images reveal important forests and wetlands are disappearing in Belize
2021-03-15
AUSTIN, Texas -- Using NASA satellite images and machine learning, researchers with The University of Texas at Austin have mapped changes in the landscape of northwestern Belize over a span of four decades, finding significant losses of forest and wetlands, but also successful regrowth of forest in established conservation zones that protect surviving structures of the ancient Maya. The research serves as a case study for other rapidly developing and tropical regions of the globe, especially in places struggling to balance forest and wetland conservation with agricultural needs and food security. "Broad-scale global studies show that tropical deforestation and wetland destruction is occurring ...

Story tips: Urban climate impacts, materials' dual approach and healing power

Story tips: Urban climate impacts, materials dual approach and healing power
2021-03-15
Modeling - Urban climate impacts Researchers at Oak Ridge National Laboratory have identified a statistical relationship between the growth of cities and the spread of paved surfaces like roads and sidewalks. These impervious surfaces impede the flow of water into the ground, affecting the water cycle and, by extension, the climate. "We've shown that there is a specific mathematical shape to the relationship between a city's population and the total paved area," ORNL's Christa Brelsford said. "Using that, we examined climate model predictions and determined they correctly represent some important attributes ...

Three bacterial strains discovered on space station may help grow plants on Mars

2021-03-15
In order to withstand the rigors of space on deep-space missions, food grown outside of Earth needs a little extra help from bacteria. Now, a recent discovery aboard the International Space Station (ISS) has researchers may help create the 'fuel' to help plants withstand such stressful situations. Publishing their findings to END ...

Women veterinarians earn $100K less than men annually

2021-03-15
ITHACA, N.Y. - Women veterinarians make less than their male counterparts, new research from Cornell University's College of Veterinary Medicine has found ¬- with an annual difference of around $100,000 among the top quarter of earners. The disparity predominantly affects recent graduates and the top half of earners, according to the research, the first overarching study of the wage gap in the veterinary industry. "Veterinarians can take many paths in their careers, all of which affect earning potential," said the paper's senior author, Dr. Clinton Neill, assistant professor in the Department of Population Medicine and Diagnostic Sciences. "Similar to what's been found in the human medicine world, we found the wage gap was more prominent ...

When English and French mix in literature

2021-03-15
Do children learning French as a second language see benefits from reading bilingual French-English children's books? A study recently published in the journal Language and Literacy found that bilingual books, which are not often used in French immersion classrooms, are seen by students as an effective tool for second language learning. To find out more on this topic, we spoke with the co-author of the paper, Joël Thibeault, Assistant Professor of French education at uOttawa's Faculty of Education. What is the topic of your research? "My research focuses on the educational value of bilingual children's books in the teaching of French as a second language. To highlight this value, I zeroed in on elementary students in French immersion ...

Faster drug discovery through machine learning

Faster drug discovery through machine learning
2021-03-15
Drugs can only work if they stick to their target proteins in the body. Assessing that stickiness is a key hurdle in the drug discovery and screening process. New research combining chemistry and machine learning could lower that hurdle. The new technique, dubbed DeepBAR, quickly calculates the binding affinities between drug candidates and their targets. The approach yields precise calculations in a fraction of the time compared to previous state-of-the-art methods. The researchers say DeepBAR could one day quicken the pace of drug discovery and protein engineering. "Our method is orders of magnitude faster than before, meaning we can have drug discovery that is both efficient and reliable," ...

What happens in your brain when you 'lose yourself' in fiction

2021-03-15
COLUMBUS, Ohio - If you count yourself among those who lose themselves in the lives of fictional characters, scientists now have a better idea of how that happens. Researchers found that the more immersed people tend to get into "becoming" a fictional character, the more they use the same part of the brain to think about the character as they do to think about themselves. "When they think about a favorite fictional character, it appears similar in one part of the brain as when they are thinking about themselves," said Timothy Broom, lead author of the study and doctoral student in psychology at The Ohio State University. The study was published ...

Pre-term births in Tennessee decreased during pandemic

2021-03-15
Statewide stay-at-home orders put in place as Tennessee fought to control the spread of coronavirus last March were associated with a 14% lower rate of preterm birth, according to a research letter published today in JAMA Pediatrics. Preterm infants have higher morbidity and mortality risks than babies born at term. Senior author Stephen Patrick, MD, director of the Vanderbilt Center for Child Health Policy and a neonatologist at the Monroe Carell Jr. Children's Hospital at Vanderbilt and his colleagues had observed in March that there appeared to be fewer infants than usual in the NICU at ...

Video-led feedback programme reduces behaviour problems in children as young as 12 months

2021-03-15
A home-based parenting programme to prevent childhood behaviour problems, which very unusually focuses on children when they are still toddlers and, in some cases, just 12 months old, has proven highly successful during its first public health trial. The six-session programme involves providing carefully-prepared feedback to parents about how they can build on positive moments when playing and engaging with their child using video clips of everyday interactions, which are filmed by a health professional while visiting their home. It was trialled with 300 families of children who had shown early signs of behaviour problems. Half of the families received the programme alongside routine ...

Association of clinical, biological, brain MRI findings with electroencephalographic findings for patients with COVID-19

2021-03-15
What The Study Did: Researchers analyzed neurologic manifestations, biological and electroencephalography (EEG, which records the brain's electrical activity) findings plus brain MRI images in a study of 78 adult patients with COVID-19 in France. Authors: Virginie Lambrecq, M.D., Ph.D., of the Sorbonne Université in Paris, is the corresponding author. To access the embargoed study: Visit our For The Media website at this link https://media.jamanetwork.com/ (doi:10.1001/jamanetworkopen.2021.1489) Editor's Note: The article includes conflict of interest ...

Psychotropic drug prescribing among nursing home residents in Canada during COVID-19 pandemic

2021-03-15
What The Study Did: This population-based study of all nursing home residents in Ontario, Canada, found increased prescribing of psychotropic drugs at the onset of the COVID-19 pandemic that persisted through September 2020. Although absolute increases in prescribing were small, they were disproportionate to expected secular prescribing trends from April 2018 to February 2020, and they were distinct from observed prescribing changes for other drugs during the pandemic. Authors: Nathan M. Stall, M.D., of Sinai Health and the University Health Network in Toronto, is the corresponding author. To access the embargoed study:  Visit our For The Media website at this link https://media.jamanetwork.com/ (doi:10.1001/jamainternmed.2021.0224) Editor's ...

Association of preterm birth rate with COVID-19 statewide stay-at-home orders in Tennessee

2021-03-15
What The Study Did: Researchers used Tennessee birth records from 2015 to 2020 to examine the odds of preterm birth in the state during the 2020 COVID-19 stay-at-home order compared with the same periods in 2015 to 2019. Authors: Elizabeth M. Harvey, Ph.D., M.P.H., of the Tennessee Department of Health in Nashville, is the corresponding author. To access the embargoed study: Visit our For The Media website at this link https://media.jamanetwork.com/ (doi:10.1001/jamapediatrics.2020.6512) Editor's Note: The article includes conflict of interest disclosures. Please see the article for additional information, including other authors, author contributions ...

Screening mammography recommendations by breast cancer centers

2021-03-15
What The Study Did: Researchers examined the screening mammography recommendations regarding starting age and interval for nearly 500 breast cancer centers in the United States. Authors: Jennifer L. Marti, M.D., of Weill Cornell Medicine in New York, is the corresponding author. To access the embargoed study: Visit our For The Media website at this link https://media.jamanetwork.com/ (doi:10.1001/jamainternmed.2021.0157) Editor's Note: Please see the article for additional information, including other authors, author contributions and affiliations, conflict of interest and financial disclosures, and funding and support. INFORMATION: Media advisory: The full study and editorial are linked to this news release. Embed this link to provide your readers free access ...

SARS-CoV-2 hijacks two key metabolic pathways to rapidly replicate in host cells

2021-03-15
When SARS-CoV-2, the virus that causes COVID-19, infects a human cell, it quickly begins to replicate by seizing the cell's existing metabolic machinery. The infected cells churn out thousands of viral genomes and proteins while halting the production of their own resources. Researchers from Brigham and Women's Hospital, Massachusetts General Hospital (MGH), and the Broad Institute, studying cultured cells shortly after infecting them with the virus, now have more insight into the metabolic pathways co-opted by the virus. The findings, published in Nature Communications, highlight ...
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